PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016434967.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 1138aa    MW: 127241 Da    PI: 8.851
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016434967.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding248.7e-084479340
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                      W++e+  ++++a +++G++ Wk++a+ +   Rt +++
   XP_016434967.1 44 EWSEEDLTRFYQAYRKYGKD-WKKVAAAVK-PRTSEMV 79
                     7*****************99.******998.7887765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.59E-93988IPR009057Homeodomain-like
SMARTSM007171.7E-44189IPR001005SANT/Myb domain
PfamPF002491.6E-64480IPR001005SANT/Myb domain
CDDcd001677.23E-64479No hitNo description
Gene3DG3DSA:1.10.10.606.3E-44479IPR009057Homeodomain-like
PfamPF065841.8E-33632732IPR033471DIRP domain
SMARTSM011352.5E-58632733IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1138 aa     Download sequence    Send to blast
MAPARKSRSV NKRFSPTTEI SPSKDDSAKK NLRKRKLSDM LGPEWSEEDL TRFYQAYRKY  60
GKDWKKVAAA VKPRTSEMVE ALYMMNRAYL SLPEGTASVV GLIAMMTDHY CNLAASDSEQ  120
ESNEDAGTSR KPQKRARGKV QPNISKASEM TSPTLAASHG CLTLLKKKRS GGSRPRAVGK  180
RTPRFPVSFS CGNPKGEKYF SPSRQSLKLQ ADDTDDDVKI ALVLTEASQR GGSPQVSQTP  240
NRRTDSAMSS PVETAERKRV KIGMGNAKLL SNEVDEEEGS MEADTGELLR YKTDLVETGT  300
FGRTAQKGRR PYGKKLEIDD SGANHFDDIK EACSGTEGGQ ILGVVRGKLE MEATYEKNSR  360
TSLQGPRKRS KKVLFSRDES SAFDALQTLA DMSLMMPTAE NEDESMIQFN DEIDDHVDES  420
GSLEAVPANR QRDKRGSGGV RSRWSQPLSK FEVASTTKSK HGKVTSTDVS AVPETKQARR  480
AHKAMSSKAR KTEGHVNNNN VTGSEEAEAK EASKKSTNKG KRSYRSASPK LIKDQEPSSC  540
ADPRTERSDS AQSAAEIPVA NQVNLPTKVR SRRKMDLKKP QRQKDLKIPD KSLDDTSASF  600
TALHDRAFSL KEKISNCLSN HQVRRWCTYE WFYSAIDYPW FAKRDFVEYL NHVGLGHVPR  660
LTRVEWGVIR SSLGKPRRFS EQFLNEEKEK LNQYRESVRT HYTELREGTR EGLPTDLARP  720
LSVGQRVIAI HPKTREIHDG SVLTVDRSRC RVQFDRPELG VEFVMDIDCM PLNPFENMPT  780
LLTRRADAVD KFFESFNELK VNARANEYMK FPACDNMENG NVFSHFSPPS HPISDLLKQT  840
KVASAEVDMQ SRSGVMETAT YQSMAYSKSS GVAQIQAKEA DVQALAELAR ALDKKEAVVS  900
ELRRMNDDVL ENQKSNDCSL KDSEPFKKQY AAMLIQLNEV NEEVSCALYR LRQRNTYQGS  960
IPLAFPRPVP NFADPSTLST FDRCTSQPQE SGFLVNEIIE SSKIKARTMV DAAVQAMLSL  1020
TDRDNTTEKI EEAIGFVNDR IPLDDSCMPT QPTDPKSKNM SDKNEAEIPS ELITKCVATL  1080
LMIQKCSERQ FPPADVAKVL DSAVASLQPC CSQNFPIYAE IQQCMGIIRN QILALVPM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12935KNLRKRK
23136LRKRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-115HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016434966.10.0PREDICTED: protein ALWAYS EARLY 3-like isoform X1
RefseqXP_016434967.10.0PREDICTED: protein ALWAYS EARLY 3-like isoform X1
SwissprotQ6A3320.0ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBLK4AX040.0K4AX04_SOLLC; Uncharacterized protein
STRINGSolyc01g067560.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding